Flavorful Chicken Pesto Spaghetti Squash (Paleo, Keto, Whole30)

As seen in Satisfying Entrées for Every Table.

Dig into a cheerful dinner with roasted spaghetti squash, flavorful chicken thighs, and punchy basil pesto. The pesto is made by blitzing fresh basil, garlic, and pumpkin seeds, then tossing it through the golden squash and tasty chicken for a naturally low-carb bite. Want to keep it Whole30 or dairy-free? Just swap out the cheese in your pesto or use any nuts or seeds you’ve got sitting around. Quick to prep, no fuss—this one makes weeknights easier and packs plenty of herby goodness each forkful.

Barbara Chef
Created By Sasha
Last updated on Mon, 02 Jun 2025 15:04:10 GMT
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Chicken Pesto Spaghetti Squash. | foodthingle.com

Spaghetti squash tossed with juicy chicken thighs and a punchy basil pesto tastes kind of fancy but doesn't take much work at all. It's my go-to for fresh, filling flavors—and nobody misses grains or dairy. Awesome for meal prepping or when I need a big, satisfying pan of something super colorful during a jam-packed weeknight.

This dish happily came together after a friend dropped off homegrown basil. After making it, even my super pasta-obsessed husband asked for more squash. That's when I knew it was a winner.

Vibrant Ingredients

  • Parmesan cheese: Totally optional skip it for Whole30 but if you use cheese, buy a block and shred it yourself—tastes way better
  • Garlic: Fresh garlic gives pesto its kick Grab a big clove for bold flavor
  • Avocado oil: Blended into the pesto for that dreamy texture Plus, it's a good-for-you, neutral pick
  • Pumpkin seeds: Use raw, unsalted pepitas instead of nuts for a nice crunch and a boost of heartiness
  • Fresh basil leaves: Your pesto's superstar Pick the greenest, brightest leaves you can
  • Garlic powder: Adds another layer of yummy flavor Use basic garlic powder, nothing mixed
  • Paprika: Spanish or Hungarian both bring cozy warmth and color
  • Chicken thighs: Go for boneless, chopped chicken for deep flavor and loads of juiciness If you can, try to find organic or pasture-raised
  • Sea salt: Fine sea salt makes everything pop Works for chicken and squash
  • Avocado oil: Gives your dish healthy fats and creaminess Cold-pressed is extra nice
  • Spaghetti squash: Roast it up for tender, stringy bites that really soak up those flavors Choose one that's heavy and has smooth skin

Choosing good stuff matters! Always pick the freshest ingredients you find. And for pesto, make sure the basil is clean and super dry or your sauce will get weirdly watery.

Easy Step-by-Step Directions

Serve It Up:
Scoop big spoonfuls into your bowls and try to catch a mix of everything. If you're all about that cheese, sprinkle a little more parmesan on top before digging in
Pull It All Together:
Put all the shredded squash in a big bowl. Stir through the pesto so every strand's glossy and covered. Add in all the cooked chicken and those tasty pan juices, then gently mix. Taste and add a bit more salt if things need a flavor boost
Sear the Chicken:
Heat oil in a hot skillet, toss in the chopped chicken, then sprinkle on paprika, garlic powder, and salt. Let the chicken sit untouched for about three minutes to get that golden edge, flip, brown the other side, then cover and finish for another two to five minutes so it's cooked through and super juicy
Blend Up the Pesto:
Chuck basil, pumpkin seeds, garlic, and parmesan (if using) in your food processor. Give it a few pulses. Start drizzling in avocado oil as it runs, blending until you've got a thick but stirrable sauce. Scrape down the bowl and blitz until smooth, then taste and toss in extra salt if you want
Bake the Squash:
Roast your whole or halved squash at 400F—fork should slide in easily after about 40 to 45 minutes (big ones might be slower). Cool it so you don't burn your hands, then scrape out fun little strands with a fork
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Chicken Pesto Spaghetti Squash paleo dinner | foodthingle.com

How to Store It

Stash leftovers in an airtight container and pop them in the fridge for four days max. Honestly, flavors get even better after sitting overnight. Warm it up gently in a skillet or the microwave, but don't overdo it so the chicken stays moist

Swap Outs and Options

If you don’t have pumpkin seeds, try walnuts, almonds, pecans, or pine nuts. No chicken thighs? Chicken breast is cool too—just keep an eye so it doesn’t get dry. Going dairy free or on Whole30? Skip cheese, sprinkle in a spoonful of nutritional yeast for a touch of that nutty, cheesy taste

Fun Ways to Serve

Spoon hot into cozy bowls and add a scatter of fresh basil leaves. Toss in some spinach or handfuls of cherry tomatoes for bonus color and veggies. It’s hearty enough for dinner but also awesome cold for lunch on the go

Chicken Pesto Spaghetti Squash keto dinner. Save Pin
Chicken Pesto Spaghetti Squash keto dinner. | foodthingle.com

Tasty Traditions and Background

People have called spaghetti squash “nature’s noodles” for ages. Folks have used it as a pasta swap in Italian-style meals for years. Using pumpkin seeds in pesto instead of tree nuts is a classic kitchen move for allergies and gives your sauce a fun spin

Common Recipe Questions

→ Can I use chicken breast instead of thighs?

Totally! Chicken breast is fine here. Thighs just keep things a bit juicier and add flavor.

→ What can I substitute for pumpkin seeds in the pesto?

Try walnuts, pecans, pine nuts, or even almonds if you don't have pumpkin seeds handy.

→ Is this meal suitable for Whole30?

It sure is. Just skip the parmesan in your pesto and you're good for Whole30.

→ How do I achieve the best spaghetti squash texture?

Bake your squash with the cut side facing down. Once it's soft, grab a fork to pull out the noodle-like strands.

→ Can I make the pesto in advance?

Yep! Pesto keeps in the fridge all week, or stash it in the freezer if you want it to last longer.

→ Is this meal freezer-friendly?

You can put it in the freezer, but just so you know—the squash goes a little softer after thawing.

Pesto Chicken Squash

Baked spaghetti squash mixed with basil pesto and tender chicken thighs for a cozy, low-carb meal.

Preparation Time
20 Minutes
Cooking Time
60 Minutes
Overall Time
80 Minutes
Created By: Sasha

Recipe Type: Main Dishes

Skill Level: Moderate

Regional Style: American

Output: 6 Number of Servings

Special Diets: Low Carbohydrate, No Gluten

What You'll Need

→ Spaghetti Squash

01 A big spaghetti squash, roasted whole
02 Just a pinch of sea salt
03 A couple tablespoons of avocado oil

→ Chicken

04 Garlic powder, 1 teaspoon
05 Some paprika, 1 teaspoon
06 680 grams chopped boneless chicken thighs
07 Use 1/4 teaspoon sea salt (and add more if you want)
08 A spoonful of avocado oil, about 1 tablespoon

→ Pesto

09 Pumpkin seeds, 75 grams
10 One nice garlic clove, big size
11 160 ml avocado oil
12 60 grams parmesan cheese (optional — skip it for Whole30)
13 A couple handfuls of fresh basil leaves, about 2 cups

Steps to Follow

Step 01

In a big bowl, toss those squash strands with all your pesto, then dump in the cooked chicken (pan juices and all). Mix it together. Taste it and give it a bit more salt if you think it needs it.

Step 02

Warm up a skillet on medium-high. Pour in the avocado oil. Put in the chopped chicken, plus salt, garlic powder, and paprika. Let it sit for three minutes to brown. Now give it a stir, brown for three more minutes, stir again, pop a lid on, and cook two to five more minutes until it’s all the way done.

Step 03

Toss your basil, pumpkin seeds, garlic, and parmesan (if that's your thing) into a food processor. Pulse it to chop everything up. With the machine running, slowly pour in avocado oil until it looks just right. Stop and scrape the sides if you need to.

Step 04

Heat your oven to 200°C, grab your squash and slice it lengthwise. Get out the seeds with a spoon. Brush the open sides with avocado oil and sprinkle with salt. Lay them cut side down on a baking tray. Roast for about 35–45 minutes. The squash is ready when you can easily pull the strands apart with a fork. Let it cool off a bit before handling.

Additional Tips

  1. Don’t have pumpkin seeds? Pecans, walnuts, pine nuts, or almonds all work for the pesto.

Essential Tools

  • Baking tray
  • Food processor
  • Spatula
  • Big mixing bowl
  • Chef’s knife
  • Skillet
  • Spoon

Allergen Information

Always verify ingredient labels for allergens and consult with a healthcare expert if unsure.
  • Dairy is in there if you add parmesan; also contains pumpkin seeds.

Nutrition Info (Per Serving)

These details are best used as an estimate and shouldn't replace professional health advice.
  • Calories: 450
  • Fat Content: 34 g
  • Carbohydrates: 11 g
  • Protein: 28 g