Heavenly Moist Berry Cheesecake Muffins

As seen in Small Bites, Big Flavors.

Our berry cheese muffins hit the sweet spot between flavor and crunch. Each one comes stuffed with juicy blueberries and raspberries, hiding a velvety cheesecake middle and topped with crispy streusel bits. We've added Greek yogurt to keep them super moist, while a light drizzle of sweetness finishes them off. They work great as morning treats, after-dinner sweets, or midday snacks - these easy treats bring fruity, creamy goodness in every bite. They're perfect during summer berry season or whenever you're in the mood for something fruity and rich.

Barbara Chef
Created By Sasha
Last updated on Sun, 04 May 2025 13:27:43 GMT
A cupcake with berries and cream. Save Pin
A cupcake with berries and cream. | foodthingle.com

I've turned weekend mornings into something special with these berry-filled cream cheese muffins. They blend juicy summer fruits, smooth cheesecake centers, and crunchy buttery tops into one amazing bite you won't forget.

These came about when my sister dropped by last summer with tons of berries from the farmers market that weren't gonna last much longer. Now my family bugs me to make them for every get-together and holiday breakfast.

Ingredients

  • All purpose flour: Makes up the main structure for both the muffin mix and crumbly topping giving you that perfect bite
  • Greek yogurt: Keeps everything super moist and adds a tiny tang that cuts through the sweetness
  • Fresh berries: Bring pops of juice and natural sweetness. Try mixing blue and red berries for pretty color contrast
  • Cream cheese: Gives you that dreamy cheesecake middle that makes folks go wow. Stick with the full-fat kind for best taste
  • Light brown sugar: Adds a hint of caramel flavor to the topping that white sugar just can't give you
  • Vanilla extract: Boosts all the other flavors without taking over. Go for the real stuff, not the fake kind

Step-by-Step Instructions

Prepare the Streusel:
Throw flour, brown sugar, and salt in a bowl and mix them up good. Pour melted butter in and work it around with a fork until you get crumbly bits ranging from tiny to smallish chunks. When squeezed, it should stick together but still break apart easily.
Mix the Cream Cheese Filling:
Beat your softened cream cheese until it's completely smooth with no lumps—this really matters for a silky center. Mix in sugar, vanilla, and cornstarch just until they're combined. That cornstarch keeps your filling from turning runny while baking.
Create the Muffin Batter:
Mix all the dry stuff (flour, baking powder, and salt) really well so everything's spread out evenly. In another bowl, whisk the egg and sugar for about a minute until it looks pale and a bit thick. Add in the yogurt, oil, and vanilla until everything looks smooth. The yogurt's the secret to making these super moist.
Combine and Add Berries:
Gently fold wet stuff into dry stuff with just a few strokes—don't go crazy or you'll end up with tough muffins. When it's barely mixed, carefully add about half your berries, letting some break a little while keeping others whole for juice bursts.
Assemble the Layers:
Put a little batter in each muffin cup, pushing it slightly up the sides to make a little nest. Spoon cream cheese filling right in the middle, keeping it away from the edges. This gives you that awesome surprise when someone takes a bite.
Finish and Bake:
Cover with leftover batter, scatter more berries on top, and pile on lots of streusel, pressing down just a tiny bit. Starting hot at 425°F then dropping to 350°F gives you those high, pretty tops like fancy bakeries make.
A cupcake with berries on top. Save Pin
A cupcake with berries on top. | foodthingle.com

I got the idea for that cream cheese middle from watching my grandma make cheese danish every Christmas morning. I can still see her carefully adding berries to the mix, always telling us kids not to stir too much or we'd miss out on finding those lovely fruit pockets.

Perfect Berry Selection

The berries you pick really change how these muffins turn out. While I call for blueberries and raspberries, don't be afraid to try blackberries, chopped strawberries, or cranberries when fall comes around. Fresh fruit always works best for flavor and texture, but frozen berries do the job in winter months. Just toss them in while they're still frozen so they don't bleed color into your batter. Look for berries that smell amazing, are in season, and have deep color all the way through.

Make Ahead Options

These treats are great for planning ahead. You can make the streusel up to 3 days early and keep it in the fridge in a sealed container. Mix the batter the night before without adding the fruit—just cover it tight and stick it in the fridge. Next morning, fold in your berries and finish putting everything together. Once baked, the muffins stay good for 2 days at room temp in a sealed container, or up to 5 days in the fridge. Pop them in the microwave for 15 seconds before eating to make them taste fresh-baked again.

A cupcake with berries on top. Save Pin
A cupcake with berries on top. | foodthingle.com

Serving Suggestions

These muffins taste great all by themselves, but for a fancy brunch, serve them slightly warm with a plate of fresh fruit, some homemade whipped cream, and hot coffee on the side. For a dessert twist, warm one up and top it with a small scoop of vanilla ice cream, letting it melt a bit into the fruit and crumbly topping. They also make really nice gifts packed in brown paper boxes tied with string, especially when berries are in season and tasting their best.

Common Recipe Questions

→ Can I use frozen berries instead of fresh?

You can totally use frozen berries. Just mix them with a bit of flour first so they don't sink down or make your batter too wet.

→ What substitutes can I use for Greek yogurt?

Sour cream works great instead of Greek yogurt. Regular plain yogurt is another good option. Both will keep your muffins moist and add that slight tang.

→ How do I store the muffins?

Keep your muffins in a sealed container at room temp for up to 2 days. They'll last a week in the fridge. Warm them up a little before eating to make them taste fresh again.

→ Can I make the batter ahead of time?

It's better to mix and bake right away for the best rise and texture. But you can make the streusel topping and cheese filling ahead and keep them separate until baking time.

→ What can I use instead of the glaze?

Don't want to use glaze? Just dust some powdered sugar on top of your cooled muffins for a simple finish.

Juicy Berry Cheese Bites

Juicy treats with berries, smooth center, and crumbly top.

Preparation Time
15 Minutes
Cooking Time
30 Minutes
Overall Time
45 Minutes
Created By: Sasha

Recipe Type: Appetizers & Snacks

Skill Level: Moderate

Regional Style: American

Output: 10 Number of Servings (10 muffins)

Special Diets: Meat-Free

What You'll Need

→ Crumb Topping Mix

01 2/3 cup plain flour
02 1/3 cup packed brown sugar
03 1/4 teaspoon salt
04 1/4 cup melted unsalted butter

→ Cheese Mix Center

05 6 oz. softened cream cheese
06 3 tablespoons white sugar
07 1 teaspoon vanilla flavoring
08 1 teaspoon cornstarch powder

→ Fruit Muffin Base

09 1 cup plain flour
10 1/4 teaspoon salt
11 1 teaspoon baking powder
12 1/4 cup cooking oil
13 1/2 cup white sugar
14 1 large egg
15 1/2 teaspoon vanilla flavoring
16 1/2 cup Greek yogurt
17 1 1/2 cups mixed berries (1 cup blueberries plus 1/2 cup raspberries)

→ Sweet Topping

18 3/4 cup icing sugar
19 1 1/2–2 1/2 teaspoons milk or heavy cream

Steps to Follow

Step 01

Get your oven hot at 425°F (220°C). Put paper liners in your muffin tin and leave it aside.

Step 02

Mix flour, sugar, and salt in a bowl. Pour in the melted butter and use a fork to make rough crumbs. Put it aside for later.

Step 03

Blend soft cream cheese with sugar, cornstarch, and vanilla until just smooth.

Step 04

Combine flour, baking powder, and salt in a big bowl. Set it aside. In another bowl, mix egg and sugar until blended. Add yogurt, oil, and vanilla until the mix looks light yellow. Pour wet stuff into dry stuff and stir well. Carefully add 1/2 cup blueberries and half the raspberries without turning the batter pink. Save leftover berries for the top.

Step 05

Put about 1 1/2 tablespoons of batter in each paper cup. Push it down a bit in the middle, then add about 1 tablespoon of cheese filling there. Toss a few berries on top and fill cups about 2/3 full. Sprinkle lots of crumb mix on top, pressing lightly. Add extra berries on top if you want.

Step 06

Put your muffins in the hot oven and turn it down to 350°F (175°C). Bake for 30-35 minutes until they're golden on top and firm in the middle.

Step 07

Let muffins sit in the pan for 5-10 minutes, then move them to a rack to cool all the way. For the sweet drizzle, mix icing sugar with milk or cream. Start with just 1 teaspoon of liquid and add more until it's runny enough. Drizzle it over each cooled muffin before eating.

Additional Tips

  1. Be super gentle when adding the red berries so your batter doesn't turn pink.

Essential Tools

  • Muffin tin
  • Paper liners
  • Mixing bowls
  • Fork
  • Rubber spatula
  • Wire cooling rack

Allergen Information

Always verify ingredient labels for allergens and consult with a healthcare expert if unsure.
  • Has dairy products (cream cheese and yogurt)
  • Contains wheat (flour)

Nutrition Info (Per Serving)

These details are best used as an estimate and shouldn't replace professional health advice.
  • Calories: 210
  • Fat Content: 8 g
  • Carbohydrates: 35 g
  • Protein: 4 g